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National Library of Medicine Citations for COVID-19
The following have had published studies. These are report on the averages of a group of patients; they do not apply to all patients and are not necessary predictive.
Some studies were done on people with specific conditions, ethnic origin or diet style (i.e. traditional Chinese Diet versus Western Diet), which may be why some
shifts are in opposite directions.
Note these are associations and not causation. Items being high or low may be part of the immune response.
⬆️ indicate a study reporting it is high. ⬇️ indicates a study reporting it is low.
Pseudomonadota ⬆️⬆️⬇️⬇️⬇️
Campylobacterota ⬆️
Fusobacteriota ⬆️⬇️⬇️⬇️
Elusimicrobiota ⬆️
Spirochaetota ⬇️
Betaproteobacteria ⬆️
Gammaproteobacteria ⬆️
Enterobacterales ⬆️
Stenotrophomonas maltophilia ⬆️
Vibrionaceae ⬆️
Aeromonadaceae ⬇️
Haemophilus ⬆️⬇️
Haemophilus influenzae ⬆️⬇️
Moraxellaceae ⬆️⬇️
Acinetobacter ⬆️
Moraxella ⬆️
Acinetobacter bereziniae ⬆️
Acinetobacter baumannii ⬆️⬆️⬆️⬆️
Pseudomonas ⬆️⬆️⬆️⬆️
Pseudomonas aeruginosa ⬆️⬆️
Pseudomonas veronii ⬆️
Enterobacteriaceae ⬆️⬆️⬆️⬆️⬆️⬆️⬆️
Serratia marcescens ⬆️
Morganella morganii ⬆️⬆️
Salmonella ⬆️
Citrobacter ⬆️
Escherichia ⬆️⬆️⬆️⬆️
Shigella ⬆️⬆️
Klebsiella aerogenes ⬆️⬇️
Klebsiella pneumoniae ⬆️⬆️⬆️
Enterobacter cloacae ⬇️⬇️
Escherichia coli ⬆️
Acetobacteraceae ⬆️
Nitrobacteraceae ⬆️
Methylobacteriaceae ⬆️
Neisseria ⬆️⬆️⬆️⬆️⬇️
Burkholderia ⬆️⬆️
Burkholderia cepacia ⬆️
Herbaspirillum ⬆️⬆️
Burkholderiales bacterium 1_1_47 ⬇️
Parasutterella ⬆️⬆️
Parasutterella excrementihominis ⬇️⬇️
Verrucomicrobiota ⬇️
Akkermansia ⬇️⬇️⬇️⬇️⬇️
Akkermansia muciniphila ⬆️⬆️⬇️⬇️
Bacteroidota ⬆️⬆️⬆️
Bacteroidia ⬆️⬇️
Flavobacteriaceae ⬆️
Elizabethkingia meningoseptica ⬆️
Bacteroidaceae ⬇️
Rikenellaceae ⬆️
Prevotellaceae ⬆️⬇️
Alistipes ⬇️⬇️
Alistipes finegoldii ⬆️
Alistipes onderdonkii ⬆️
Alistipes shahii ⬇️⬇️⬇️
Alistipes indistinctus ⬇️⬇️⬇️
Alistipes putredinis ⬇️⬇️⬇️
Porphyromonas ⬇️
Prevotella ⬆️⬆️⬆️⬆️⬇️⬇️⬇️
Alloprevotella ⬆️
Alloprevotella tannerae ⬆️
Segatella copri ⬇️
Prevotella bivia ⬆️
Odoribacter ⬆️
Odoribacter splanchnicus ⬇️⬇️
Coprobacter ⬆️
Coprobacter fastidiosus ⬇️⬇️⬇️
Parabacteroides ⬆️⬆️
Parabacteroides merdae ⬆️
Bacteroides ⬆️⬆️⬆️⬆️⬆️⬆️⬆️⬇️⬇️⬇️
Bacteroides thetaiotaomicron ⬆️⬇️⬇️⬇️
Bacteroides uniformis ⬆️⬆️⬇️⬇️
Bacteroides stercoris ⬆️⬆️
Bacteroides caccae ⬇️
Bacteroides eggerthii ⬇️⬇️
Bacteroides ovatus ⬆️⬆️⬇️
Bacteroides cellulosilyticus ⬇️⬇️
Bacteroides graminisolvens ⬆️
Bacteroides salyersiae ⬇️⬇️
Bacteroides nordii ⬆️⬆️⬆️
Bacteroides luti ⬇️
Phocaeicola plebeius ⬆️
Phocaeicola massiliensis ⬆️⬇️⬇️⬇️
Phocaeicola coprophilus ⬆️⬆️⬆️⬇️
Phocaeicola dorei ⬆️⬆️⬇️⬇️⬇️
Phocaeicola vulgatus ⬆️⬇️
Bacillota ⬆️⬆️⬇️
Actinomycetota ⬆️⬆️⬇️⬇️⬇️
Clostridia ⬇️
Bacilli ⬆️
Finegoldia ⬆️⬆️⬇️
Anaerococcus ⬇️
Peptococcaceae ⬆️
Oscillospiraceae ⬇️⬇️⬇️
Clostridiaceae ⬇️
Eubacterium ⬇️⬇️⬇️
Eubacterium limosum ⬇️⬇️
Eubacterium ventriosum ⬇️⬇️
Ruminococcus ⬆️⬆️⬆️⬇️⬇️⬇️⬇️⬇️⬇️
Faecalibacterium ⬆️⬆️⬆️⬇️⬇️⬇️⬇️⬇️⬇️⬇️⬇️
Oscillospira ⬇️
Ruminiclostridium ⬆️
Ruthenibacterium ⬆️
Ruminococcus albus ⬆️⬆️
Ruminococcus bromii ⬇️
Faecalibacterium prausnitzii ⬇️⬇️⬇️⬇️⬇️⬇️⬇️⬇️
Lawsonibacter asaccharolyticus ⬇️⬇️
[Clostridium] leptum ⬇️⬇️⬇️
Butyricicoccus ⬇️
Clostridium ⬆️⬆️⬆️⬆️⬇️
Clostridium butyricum ⬇️⬇️
Howardella ⬆️
Gemmiger formicilis ⬇️⬇️
Peptostreptococcaceae ⬆️
Romboutsia ⬇️⬇️
Peptostreptococcus ⬆️
Mogibacterium ⬆️
Christensenellaceae ⬆️
Lachnospiraceae ⬆️⬆️⬆️⬆️⬇️⬇️⬇️⬇️
Dorea ⬇️⬇️
Anaerostipes ⬆️⬇️⬇️⬇️
Blautia ⬆️⬇️⬇️⬇️⬇️⬇️
Fusicatenibacter ⬇️⬇️⬇️⬇️
Lachnoclostridium ⬆️⬆️⬇️
Agathobacter ⬇️⬇️
Butyrivibrio ⬇️⬇️
Roseburia ⬇️⬇️⬇️⬇️
Coprococcus ⬇️⬇️⬇️
[Clostridium] colinum ⬇️
[Clostridium] nexile ⬇️⬇️
[Clostridium] piliforme ⬆️⬆️
Hungatella hathewayi ⬆️⬆️⬆️⬆️⬆️
Agathobacter rectalis ⬇️⬇️⬇️⬇️
Lachnospiraceae bacterium 1_1_57FAA ⬆️
Lachnospiraceae bacterium 2_1_58FAA ⬆️
Lachnospiraceae bacterium 1_4_56FAA ⬆️
Dorea longicatena ⬇️⬇️
Dorea formicigenerans ⬆️⬆️⬇️⬇️
Anaerostipes hadrus ⬆️
Mediterraneibacter gnavus ⬇️
Anaerobutyricum hallii ⬇️⬇️⬇️
Enterocloster clostridioformis ⬇️⬇️
Enterocloster citroniae ⬆️
Lachnospira eligens ⬇️⬇️
Coprococcus catus ⬇️
Blautia luti ⬇️
Blautia hominis ⬇️
Blautia obeum ⬆️⬇️⬇️
Roseburia intestinalis ⬇️⬇️⬇️
Erysipelotrichaceae ⬆️
Solobacterium ⬆️
Holdemania ⬆️
[Clostridium] innocuum ⬆️⬆️
Coprobacillus ⬆️⬆️⬆️⬆️⬆️⬆️
Thomasclavelia ramosa ⬆️⬆️⬆️⬆️⬆️⬆️⬆️⬇️
Phascolarctobacterium ⬇️
Dialister ⬆️⬆️⬆️
Veillonella ⬆️⬆️⬆️⬆️⬆️⬆️⬆️
Veillonella dispar ⬇️⬇️
Lactobacillales ⬆️
Staphylococcaceae ⬆️⬆️
Bacillus ⬆️
Listeria monocytogenes ⬆️
Gemella ⬆️⬆️⬆️
Staphylococcus ⬆️⬆️⬆️
Staphylococcus aureus ⬆️⬆️⬆️
Staphylococcus epidermidis ⬆️
Streptococcaceae ⬆️
Lactobacillaceae ⬆️
Aerococcaceae ⬆️
Carnobacteriaceae ⬇️
Streptococcus ⬆️⬆️⬆️⬆️⬆️⬆️⬆️⬆️⬆️⬆️⬆️⬆️⬆️⬆️⬇️⬇️
Streptococcus oralis ⬆️
Streptococcus salivarius ⬇️
Streptococcus thermophilus ⬆️
Streptococcus pneumoniae ⬆️⬆️⬇️
Streptococcus infantis ⬆️⬆️
Granulicatella ⬆️⬆️⬇️
Weissella ⬆️
Lactobacillus ⬆️⬆️⬆️⬇️⬇️⬇️⬇️
Limosilactobacillus reuteri ⬇️
Enterococcus ⬆️⬆️⬆️⬆️⬆️⬇️
Enterococcus faecium ⬆️⬇️
Enterococcus durans ⬆️
Enterococcus avium ⬆️
Actinomycetes ⬆️
Actinomyces ⬆️⬆️⬆️⬆️⬆️⬆️
Actinomyces viscosus ⬆️⬆️⬆️
Bifidobacterium ⬆️⬆️⬇️⬇️⬇️⬇️⬇️⬇️⬇️⬇️⬇️⬇️⬇️
Bifidobacterium adolescentis ⬆️⬆️⬇️
Bifidobacterium bifidum ⬇️⬇️⬇️
Bifidobacterium pseudocatenulatum ⬇️
Bifidobacterium longum ⬆️
Dermabacteraceae ⬆️
Rothia ⬆️⬆️⬆️⬆️⬆️⬆️
Rothia mucilaginosa ⬆️
Corynebacteriaceae ⬆️⬆️
Corynebacterium ⬆️⬆️
Lawsonella ⬇️
Propionibacteriaceae ⬆️⬇️
Cutibacterium ⬇️
Enterorhabdus ⬇️
Slackia ⬇️
Eggerthella ⬆️⬆️⬆️⬆️⬆️⬇️
Adlercreutzia ⬇️
Adlercreutzia equolifaciens ⬇️
Eggerthella lenta ⬆️⬆️
Coriobacteriaceae ⬇️
Atopobium ⬆️
Collinsella ⬇️⬇️⬇️⬇️
Senegalimassilia ⬇️
Collinsella tanakaei ⬆️
Collinsella aerofaciens ⬆️⬆️
Mycoplasmoides pneumoniae ⬆️
Mycoplasmataceae ⬇️
Mycoplasma ⬆️
Desulfovibrionaceae ⬆️
Desulfovibrio ⬆️
Spirochaetia ⬇️
Spirochaetales ⬇️
Helicobacter ⬆️
Campylobacter ⬆️⬆️⬆️
Fusobacteriia ⬇️⬇️
Fusobacterium ⬆️
Nitrospiraceae ⬇️
Deltaproteobacteria ⬆️
Dientamoeba fragilis ⬆️
Blastocystis ⬆️⬆️
Blastocystis hominis ⬇️
Rothia ⬆️⬆️⬆️⬆️⬆️
Ascomycota ⬆️⬆️
Basidiomycota ⬆️
Debaryomyces ⬆️
Candida ⬆️⬆️
Candida albicans ⬆️⬆️⬆️⬆️⬆️⬆️⬆️
Candida parapsilosis ⬇️
Nakaseomyces ⬆️
Aspergillus ⬆️⬆️⬆️⬆️⬆️⬆️⬆️⬆️⬇️
Aspergillus flavus ⬆️⬆️⬆️⬆️
Aspergillus fumigatus ⬆️
Penicillium citrinum ⬇️
Dothideales ⬆️
Aureobasidium ⬆️
Rhodotorula mucilaginosa ⬆️⬇️
Agaricomycetes ⬆️
To see matches for your sample with the literature, raise display level.
BOOM
All suggestions are computed solely on their predicted microbiome impact. Safety, side-effects etc must be evaluated by your medical professionals before starting. Some items suggests have significant risk of adverse consequences for some people.
Special thanks to David F Morrison and Geert Van Houcke for doing Quality Assurance.
Special thanks to Oliver Luk, B.Sc. (Biology) from
BiomeSight for spot checking the coding of data from the US National Library of Medicine
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