We use a subjective scale and leave the reader to translate the lab reports appropriately. If the bacteria are identified as bad/pathogenic and you are low, then do not enter them.
Bacteria Reported Level Also Known as Comment
[Ruminococcus] lactaris [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| ATCC 29176| Ruminococcus lactaris| Ruminococcus lactaris Moore et al. 1976
Acinetobacter [genus]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| Acinetobacter| Acinetobacter Brisou and Prevot 1954
Acinetobacter baumannii [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| Acinetobacter baumannii| Acinetobacter baumannii Bouvet and Grimont 1986| Acinetobacter genomosp. 2| Acinetobacter genomospecies 2| ATCC 19606| Bacterium anitratum| CCUG 19096| CIP 70.34| DSM 30007| JCM 6841| LMG 1041| LMG:1041| NCCB 85021| NCTC 12156
H00309 Multidrug-resistant Acinetobacter infection
Actinomycetota [phylum]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| Actinobacteraeota| Actinobacteraeota Oren et al. 2015| Actinobacteria| Actinobacteriota
Adlercreutzia equolifaciens [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| Adlercreutzia equolifaciens| Adlercreutzia equolifaciens Maruo et al. 2008| CCUG 54925| DSM 19450| equol-producing bacterium FJC-A10| equol-producing bacterium FJC-B20| equol-producing bacterium FJC-B9| equol-producing bacterium FJC-D53| JCM 14793| strain FJC-B9
Agathobacter rectalis [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| "Bacteroides rectalis" Hauduroy et al. 1937| "Pseudobacterium rectale" (Hauduroy et al. 1937) Krasil'nikov 1949| 'Roseburia rectale'| [Eubacterium] rectale| Agathobacter rectalis| Agathobacter rectalis (Hauduroy et al. 1937) Rosero et al. 2016| ATCC 33656| Bacteroides rectalis| CIP 105953| DSM 17629| Eubacterium rectale| Eubacterium rectale (Hauduroy et al. 1937) Prevot 1938| NCIMB 14373| not ATCC 25578| not VPI 0989| Pseudobacterium rectale| Roseburia rectale| strain A1-86| VPI 0990
Agathobaculum butyriciproducens [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| Agathobaculum butyriciproducens| Agathobaculum butyriciproducens Ahn et al. 2016| DSM 100391| Eubacterium sp. SR79| KCTC 15532| strain SR79
Akkermansia [genus]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| Akkermansia| Akkermansia Derrien et al. 2004
Akkermansia muciniphila [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| Akkermansia muciniphila| Akkermansia muciniphila Derrien et al. 2004 emend. Hahnke et al. 2016| Akkermansia sp. YL44| ATCC BAA-835| CIP 107961| strain Muc
High Levels linked to long-lived individuals
Alistipes communis [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
Alistipes finegoldii [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| AHN 2437| Alistipes finegoldii| Alistipes finegoldii Rautio et al. 2003| Bacteroides sp. ANH 2437| CCUG 46020| CIP 107999| DSM 17242| JCM 16770
Alistipes ihumii [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| "Candidatus Alistipes marseilloanorexicus" Pfleiderer et al. 2013| Alistipes ihumii| Alistipes ihumii Pfleiderer et al. 2017| Candidatus Alistipes marseilloanorexicus| CSUR P204| DSM 26107| strain AP11
Alistipes indistinctus [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| Alistipes indistinctus| Alistipes indistinctus Nagai et al. 2010| DSM 22520| JCM 16068| YIT 12060
Alistipes onderdonkii [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| Alistipes onderdonkii| Alistipes onderdonkii Song et al. 2006| Alistipes sp. WAL 8169| ATCC BAA-1178| CCUG 48946| DSM 19147| JCM 16771| WAL 8169
Alistipes shahii [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| Alistipes shahii| Alistipes shahii Song et al. 2006 emend. Hahnke et al. 2016| ATCC BAA-1179| CCUG 48947| JCM 16773| WAL 8301
Amedibacterium intestinale [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
Anaerobutyricum hallii [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| Anaerobutyricum hallii| Anaerobutyricum hallii (Holdeman and Moore 1974) Shetty et al. 2018| ATCC 27751| DSM 3353| Eubacterium hallii| Eubacterium hallii Holdeman and Moore 1974| VPI B4-27
Anaerostipes caccae [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| Anaerostipes caccae| Anaerostipes caccae Schwiertz et al. 2002| Anaerostipes sp. 3_2_56FAA| butyrate-producing bacterium L1-92| DSM 14662| JCM 13470| NCIMB 13811| strain L1-92
Anaerostipes hadrus [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| Anaerostipes hadrus| Anaerostipes hadrus (Moore et al. 1976) Allen-Vercoe et al. 2013| Anaerostipes sp. 5/1/63FAA| ATCC 29173| butyrate-producing bacterium SS2/1| butyrate-producing bacterium SSC/2| Clostridiales bacterium SSC/2| DSM 3319| Eubacterium hadrum| Eubacterium hadrum Moore et al. 1976| JCM 9980| VP 82-52| VPI B2-52
Bacillota [phylum]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| Bacillaeota| Bacillaeota Oren et al. 2015| Bacillota| Bacillus/Clostridium group| clostridial firmicutes| Clostridium group firmicutes| Firmacutes| Firmicutes| Firmicutes corrig. Gibbons and Murray 1978| Low G+C firmicutes| low G+C Gram-positive bacteria| low GC Gram+
Bacteroides [genus]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| "Ristella" Prevot 1938| Bacteroides| Bacteroides Castellani and Chalmers 1919 (Approved Lists 1980) emend. Shah and Collins 1989| Capsularis| Capsularis Prevot 1938 (Approved Lists 1980)| Ristella
Bacteroides caccae [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| ATCC 43185| Bacteroides caccae| Bacteroides caccae Johnson et al. 1986 emend. Hahnke et al. 2016| CCUG 38735| CIP 104201| DSM 19024| JCM 9498| NCTC 13051| VPI 3452A
Bacteroides cellulosilyticus [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| Bacteroides cellulosilyticus| Bacteroides cellulosilyticus Robert et al. 2007 emend. Hahnke et al. 2016| CCUG 44979| DSM 14838| JCM 15632| strain CRE21
Bacteroides fragilis [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| "Bacteroides inaequalis" Eggerth and Gagnon 1933| "Bacteroides incommunis" Eggerth and Gagnon 1933| "Bacteroides uncatus" Eggerth and Gagnon 1933| "Fusiformis fragilis" Topley and Wilson 1929| "Pseudobacterium fragilis" Krasil'nikov 1949| "Pseudobacterium inaequalis" (Eggerth and Gagnon 1933) Krasil'nikov 1949| "Pseudobacterium incommunis" (Eggerth and Gagnon 1933) Krasil'nikov 1949| "Pseudobacterium uncatum" (Eggerth and Gagnon 1933) Krasil'nikov 1949| "Ristella fragilis" Prevot 1938| "Ristella incommunis" (Eggerth and Gagnon 1933) Prevot 1938| "Ristella uncata" (Eggerth and Gagnon 1933) Prevot 1938| "Sphaerophorus inaequalis" (Eggerth and Gagnon 1933) Prevot 1938| "Sphaerophorus intermedius" Bergan and Hovig 1968| ATCC 25285| Bacillus fragilis| Bacillus fragilis Veillon and Zuber 1898| Bacteroides fragilis| Bacteroides fragilis (Veillon and Zuber 1898) Castellani and Chalmers 1919 (Approved Lists 1980) emend. Hahnke et al. 2016| Bacteroides inaequalis| Bacteroides incommunis| Bacteroides sp. 2_1_16| Bacteroides sp. 2_1_56FAA| Bacteroides uncatus| CCUG 4856| CIP 77.16| DSM 2151| Fusiformis fragilis| JCM 11019| LMG 10263| LMG:10263| NCTC 9343| Pseudobacterium fragilis| Pseudobacterium inaequalis| Pseudobacterium incommunis| Pseudobacterium uncatum| Ristella fragilis| Ristella incommunis| Ristella uncata| Sphaerophorus inaequalis| Sphaerophorus intermedius
H02076 Bacteroides infection
Bacteroides ovatus [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| "Bacteroides fragilis subsp. ovatus" (Eggerth and Gagnon 1933) Holdeman and Moore 1970| "Pasteurella ovata" (Eggerth and Gagnon 1933) Prevot 1938| "Pseudobacterium ovatum" (Eggerth and Gagnon 1933) Krasil'nikov 1949| ATCC 8483| bacterium NLAE-zl-C11| bacterium NLAE-zl-C34| bacterium NLAE-zl-C500| bacterium NLAE-zl-C57| bacterium NLAE-zl-H304| bacterium NLAE-zl-H361| bacterium NLAE-zl-H59| bacterium NLAE-zl-H73| Bacteroides fragilis subsp. ovatus| Bacteroides ovatus| Bacteroides ovatus Eggerth and Gagnon 1933 (Approved Lists 1980) emend. Hahnke et al. 2016| BCRC 10623| CCRC 10623| CCRC:10623| CCUG 4943| CIP 103756| DSM 1896| JCM 5824| NCTC 11153| Pasteurella ovata| Pseudobacterium ovatum
Bacteroides salyersiae [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| ATCC BAA-997| Bacteroides salyersae| Bacteroides salyersiae| Bacteroides salyersiae corrig. Song et al. 2005| Bacteroides sp. WAL 10018| CCUG 48945| DSM 18765| JCM 12988| WAL 10018
Bacteroides stercoris [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| ATCC 43183| Bacteroides stercoris| Bacteroides stercoris Johnson et al. 1986| CCUG 38733| CIP 104203| JCM 9496| NCTC 13053| VPI B5-21
Bacteroides thetaiotaomicron [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| "Bacillus thetaiotaomicron" Distaso 1912| "Bacteroides fragilis subsp. thetaiotaomicron" (Distaso 1912) Holdeman and Moore 1970| "Pseudobacterium thetaiotaomicron" (Distaso 1912) Krasil'nikov 1949| "Sphaerocillus thetaiotaomicron" (Distaso 1912) Prevot 1938| ATCC 29148| Bacillus thetaiotaomicron| bacterium NLAE-zl-C523| bacterium NLAE-zl-C579| bacterium NLAE-zl-G288| bacterium NLAE-zl-H207| bacterium NLAE-zl-H463| bacterium NLAE-zl-H492| bacterium NLAE-zl-P32| bacterium NLAE-zl-P699| Bacteroides fragilis subsp. thetaiotaomicron| Bacteroides sp. 1_1_6| Bacteroides thetaiotaomicron| Bacteroides thetaiotaomicron (Distaso 1912) Castellani and Chalmers 1919 (Approved Lists 1980) emend. Hahnke et al. 2016| CCUG 10774| CIP 104206| DSM 2079| JCM 5827| NCTC 10582| Pseudobacterium thetaiotaomicron| Sphaerocillus thetaiotaomicron| VPI 5482
Bacteroides uniformis [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| ATCC 8492| Bacteroides uniformis| Bacteroides uniformis Eggerth and Gagnon 1933 (Approved Lists 1980) emend. Hahnke et al. 2016| CCUG 4942| CIP 103695| DSM 6597| JCM 5828| NCTC 13054
Infectious bacteria
Bacteroides xylanisolvens [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| bacterium NLAE-zl-C182| bacterium NLAE-zl-C202| bacterium NLAE-zl-C29| bacterium NLAE-zl-C339| bacterium NLAE-zl-G310| bacterium NLAE-zl-G339| bacterium NLAE-zl-G421| bacterium NLAE-zl-H194| bacterium NLAE-zl-P352| bacterium NLAE-zl-P393| bacterium NLAE-zl-P727| bacterium NLAE-zl-P732| bacterium NLAE-zl-P736| Bacteroides xylanisolvens| Bacteroides xylanisolvens Chassard et al. 2008| CCUG 53782| DSM 18836| JCM 15633| strain XB1A
Bacteroidota [phylum]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| Bacteroidaeota| Bacteroidaeota Oren et al. 2015| Bacteroides-Cytophaga-Flexibacter group| Bacteroidetes| Bacteroidetes Krieg et al. 2012| Bacteroidota| BCF group| CFB group| CFB group bacteria| Cytophaga-Flexibacter-Bacteroides phylum
Over 70%ile, prone to being fat
Barnesiella intestinihominis [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| Barnesiella intestinihominis| Barnesiella intestinihominis Morotomi et al. 2008 emend. Hahnke et al. 2016| Barnesiella sp. YIT 11860| DSM 21032| JCM 15079| YIT 11860
Bifidobacterium animalis [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| "Bifidobacterium longum subsp. animalis biotype a" Mitsuoka 1969| AS 1.2268| ATCC 25527| BCRC 14668| Bifidobacterium animalis| Bifidobacterium animalis (Mitsuoka 1969) Scardovi and Trovatelli 1974 emend. Masco et al. 2004| Bifidobacterium longum subsp. animalis biotype a| CCRC 14668| CCRC:14668| CCUG 24606| CCUG 33907| CIP 105419| DSM 20104| HAMBI 112| JCM 1190| KCTC 3125| LMG 10508| LMG:10508| NCFB 2242| NCIMB 702242| strain R101-8
Bifidobacterium bifidum [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| "Actinobacterium bifidum" (Tissier 1900) Puntoni 1937| "Actinomyces bifidus" (Tissier 1900) Nannizzi 1934| "Actinomyces parabifidus" (Weiss and Rettger 1938) Pine and Georg 1965| "Bacillus bifidus communis" Tissier 1900| "Bacillus bifidus" Tissier 1900| "Bacterium bifidum" (Tissier 1900) Lehmann and Neumann 1927| "Bacteroides bifidus" (Tissier 1900) Castellani and Chalmers 1919| "Bifidibacterium bifidum" (Tissier 1900) Prevot 1938| "Cohnistreptothrix bifidus" (Tissier 1900) Negroni and Fischer 1944| "Lactobacillus bifidus type II" Weiss and Rettger 1938| "Lactobacillus parabifidus" Weiss and Rettger 1938| "Nocardia bifida" (Tissier 1900) Vuillemin 1931| "Tissieria bifida" (Tissier 1900) Pribram 1929| Actinobacterium bifidum| Actinomyces bifidus| Actinomyces parabifidus| AS 1.2212| ATCC 29521| Bacillus bifidus| Bacillus bifidus communis| Bacterium bifidum| Bacteroides bifidus| BCRC 14615| Bifidibacterium bifidum| Bifidobacterium bifidum| Bifidobacterium bifidum (Tissier 1900) Orla-Jensen 1924| CCRC 14615| CCRC:14615| CCUG 18364| CCUG 45217| CIP 56.7| Cohnistreptothrix bifidus| DSM 20456| HAMBI 1380| IFO 14252| JCM 1255| KCTC 3202| Lactobacillus bifidus type II| Lactobacillus parabifidus| LMG 11041| LMG 8810| LMG:11041| LMG:8810| NBRC 100015| NBRC 14252| NCFB 2715| NCIMB 702715| NCTC 13001| Nocardia bifida| strain Ti| Tissieria bifida
Bifidobacterium breve [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| "Bifidobacterium parvulorum" Reuter 1963| AS 1.2213| ATCC 15700| BCRC 11846| Bifidobacterium breve| Bifidobacterium breve Reuter 1963| Bifidobacterium parvulorum| CCRC 11846| CCRC:11846| CCUG 18365| CCUG 30511 A| CIP 64.69| DSM 20213| HAMBI 558| JCM 1192| LMG 11042| LMG:11042| NCAIM B.01820| NCFB 2257| NCIMB 702257| NCTC 11815
Bifidobacterium longum [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| AS 1.2186| ATCC 15707| BCRC 11847| Bifidobacterium longum| Bifidobacterium longum Reuter 1963| Bifidobacterium sp. 12_1_47BFAA| CCRC 11847| CCRC:11847| CCUG 28903| CIP 64.62| DSM 20219| HAMBI 554| JCM 1217| KCTC 3128| LMG 10497| LMG 13197| LMG:10497| LMG:13197| NCAIM B.01819| NCFB 2259| NCIMB 702259| NCTC 11818
Bifidobacterium longum subsp. infantis [subspecies]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| "Bifidobacterium lactentis" Reuter 1963| "Bifidobacterium liberorum" Reuter 1963| AS 1.1853| AS 1.2202| ATCC 15697| BCRC 14602| BCRC 15416| Bifidobacterium infantis| Bifidobacterium infantis Reuter 1963| Bifidobacterium lactentis| Bifidobacterium liberorum| Bifidobacterium longum bv. Infantis| Bifidobacterium longum infantis| Bifidobacterium longum subsp. infantis| Bifidobacterium longum subsp. infantis (Reuter 1963) Mattarelli et al. 2008| CCRC 14602| CCRC 15416| CCRC:14602| CCRC:15416| CCUG 30512 B| CIP 64.67| DSM 20088| HAMBI 1374| HAMBI 555| HAMBI 574| JCM 1222| LMG 8811| LMG:8811| NCAIM B.01821| NCFB 2205| NCIMB 702205| NCTC 11817
Bilophila wadsworthia [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| ATCC 49260| Bilophila wadsworthia| Bilophila wadsworthia Baron et al. 1990| CCUG 32349| strain 7959| WAL 7959
Blautia [genus]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| Blautia| Blautia Liu et al. 2008 emend. Durand et al. 2017
Blautia coccoides [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| ATCC 29236| Blautia coccoides| Blautia coccoides (Kaneuchi et al. 1976) Liu et al. 2008| Clostridium coccoides| Clostridium coccoides Kaneuchi et al. 1976 (Approved Lists 1980)| DSM 935| JCM 1395| NCTC 11035| strain CLC-1
Blautia faecis [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| Blautia faecis| Blautia faecis Park et al. 2013| Blautia sp. M25| JCM 17205| KCTC 5980| strain M25
Blautia massiliensis (ex Durand et al. 2017) [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| "Blautia massiliensis" Durand et al. 2017| Blautia massiliensis| Blautia sp. GD9| CSUR P2132| DSM 101187| strain GD9
Blautia obeum [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| ATCC 29174| Blautia obeum| Blautia obeum (Moore et al. 1976) Lawson and Finegold 2015| DSM 25238| KCTC 15206| Ruminococcus obeum| Ruminococcus obeum Moore et al. 1976
Blautia wexlerae [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| ATCC BAA-1564| Blautia wexlerae| Blautia wexlerae Liu et al. 2008| DSM 19850| WAL 14507
Butyricimonas paravirosa [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| Butyricimonas paravirosa| Butyricimonas paravirosa Sakamoto et al. 2014| Butyricimonas sp. JCM 18677| CCUG 65563| JCM 18677| strain 214-4
Butyricimonas virosa [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| Butyricimonas virosa| Butyricimonas virosa Sakamoto et al. 2009 emend. Hahnke et al. 2016| Butyricimonas virosa Sakamoto et al. 2009 emend. Sakamoto et al. 2014| CCUG 56611| DSM 23226| JCM 15149| Porphyromonadaceae bacterium JCM 15149| strain MT12
Campylobacter [genus]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| Campylobacter| Campylobacter Sebald and Veron 1963 (Approved Lists 1980) emend. Tanner et al. 1981| Campylobacter Sebald and Veron 1963 (Approved Lists 1980) emend. Vandamme et al. 1991| Campylobacter Sebald and Veron 1963 (Approved Lists 1980) emend. Vandamme et al. 2010
High colorectal cancer risk
Candida [genus]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
Candidatus Methanomassiliicoccus intestinalis [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
Catenibacterium [genus]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| Catenibacterium| Catenibacterium Kageyama and Benno 2000
Christensenellaceae [family]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| Christensenellaceae| Christensenellaceae Morotomi et al. 2012
Cloacibacillus evryensis [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| Cloacibacillus evryensis| Cloacibacillus evryensis Ganesan et al. 2008| DSM 19522| JCM 14828| strain 158
Clostridioides difficile [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| "Bacillus difficilis" Hall and O'Toole 1935| "Peptoclostridium difficile" Yutin and Galperin 2013| AS 1.2184| ATCC 9689| Bacillus difficilis| BCRC 10642| CCRC 10642| CCRC:10642| CCUG 4938| CIP 104282| Clostridioides difficile| Clostridioides difficile (Hall and O'Toole 1935) Lawson et al. 2016| Clostridium difficile| Clostridium difficile (Hall and O'Toole 1935) Prevot 1938 (Approved Lists 1980)| Clostridium difficle| Clostridium sp. HMSC19D05| DSM 1296| DSMZ 1296| JCM 1296| LMG 15861| LMG:15861| NCIMB 10666| NCTC 11209| Peptoclostridium difficile
Colitis
Clostridium perfringens [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| "Bacillus perfringens" Veillon and Zuber 1898| "Bacterium welchii" Migula 1900| 'Clostridium plagarum'| ATCC 13124| Bacillus perfringens| Bacterium welchii| BCRC 10913| CCRC 10913| CCRC:10913| CCUG 1795| CIP 103409| Clostridium perfringens| Clostridium perfringens (Veillon and Zuber 1898) Hauduroy et al. 1937| Clostridium plagarum| Clostridium sp. NCIM 2677| DSM 756| JCM 1290| LMG 11264| LMG:11264| NCAIM B.01417| NCCB 89165| NCIMB 6125| NCTC 8237
Food poisoning, gas gangrene
Coprococcus [genus]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| Coprococcus| Coprococcus Holdeman and Moore 1974
Coprococcus eutactus [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| ATCC 27759| Coprococcus eutactus| Coprococcus eutactus Holdeman and Moore 1974
Desulfovibrio fairfieldensis [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| "Desulfovibrio fairfieldensis" McDougall et al. 1997| 'Desulfovibrio fairfieldensis'| ATCC 70045| Desulfovibrio fairfieldensis| strain FH26001/95
High Levels linked to long-lived individuals
Dialister hominis [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
Dorea formicigenerans [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| ATCC 27755| Dorea formicigenerans| Dorea formicigenerans (Holdeman and Moore 1974) Taras et al. 2002| DSM 3992| Eubacterium formicigenerans| Eubacterium formicigenerans Holdeman and Moore 1974
Dorea longicatena [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| CCUG 45247| Dorea longicatena| Dorea longicatena Taras et al. 2002| DSM 13814| Eubacterium sp. III-35| JCM 11232| strain 111-35
Dysgonomonas capnocytophagoides [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| CCUG 17996| CDC Group DF-3| CIP 107043| DSM 22835| Dysgonomonas capnocytophagoides| Dysgonomonas capnocytophagoides Hofstad et al. 2000| JCM 16697| LMG 11519| LMG:11519
Dysosmobacter welbionis [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
Eggerthella lenta [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| "Bacteroides lentus" Eggerth 1935| "Pseudobacterium lentum" Krasil'nikov 1949| ATCC 25559| Bacteroides lentus| CCUG 17323 A| CIP 106637| DSM 2243| Eggerthella lenta| Eggerthella lenta (Eggerth 1935) Kageyama et al. 1999| Eggerthella lenta (Eggerth 1935) Wade et al. 1999 emend. Maruo et al. 2008| Eubacterium lentum| Eubacterium lentum (Eggerth 1935) Prevot 1938 (Approved Lists 1980)| JCM 9979| NCAIM B.01418| NCTC 11813| Pseudobacterium lentum
Enterobacteriaceae [family]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| Enterobacteraceae| Enterobacteraceae (ex Lapage 1979) Lapage 1982| Enterobacteriaceae| Enterobacteriaceae (ex Rahn 1937) Ewing et al. 1980| Enterobacteriaceae Rahn 1937 (Approved Lists 1980) emend. Adeolu et al. 2016| gamma-3 proteobacteria
Enterocloster bolteae [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| [Clostridium] bolteae| ATCC BAA-613| CCUG 46953| Clostridium bolteae| Clostridium bolteae Song et al. 2003| JCM 12243| WAL 16351
Enterocloster citroniae [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| [Clostridium] citroniae| ATCC BAA-1317| CCUG 52203| Clostridium citroniae| Clostridium citroniae Warren et al. 2007| DSM 19261| strain RMA 16102
Enterocloster clostridioformis [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| "Bacterium clostridiiforme" Burri and Ankersmit 1906| "Bacteroides clostridiiformis" (Burri and Ankersmit 1906) Holdeman and Moore 1970| "Eggerthella clostridiiformis" (Burri and Ankersmit 1906) Beerens et al. 1962| "Ristella clostridiiformis" (Burri and Ankersmit 1906) Prevot 1938| [Clostridium] clostridioforme| ATCC 25537| Bacterium clostridiiforme| Bacteroides clostridiiformis| BCRC 14545| CCRC 14545| CCRC:14545| CCUG 16791| CIP 104318| Clostridium clostridiiforme| Clostridium clostridioforme| Clostridium clostridioforme corrig. (Burri and Ankersmit 1906) Kaneuchi et al. 1976| DSM 933| Eggerthella clostridiiformis| JCM 1291| NCIMB 11018| NCTC 11224| Ristella clostridiiformis| VPI 0316
Enterococcus [genus]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| "Enterococcus" Thiercelin and Jouhaud 1903| Enterococcus| Enterococcus (ex Thiercelin and Jouhaud 1903) Schleifer and Kilpper-Balz 1984
Enterococcus faecalis [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| "Enterococcus proteiformis" Thiercelin and Jouhaud 1903| "Enterocoque" Thiercelin 1902| "Micrococcus ovalis" Escherich 1886| "Micrococcus zymogenes" MacCallum and Hastings 1899| "Streptococcus glycerinaceus" Orla-Jensen 1919| "Streptococcus liquefaciens" Sternberg 1892| ATCC 19433| ATCC 19433-U| CCUG 19916| CIP 103015| DSM 20478| Enterococcus faecalis| Enterococcus faecalis (Andrewes and Horder 1906) Schleifer and Kilpper-Balz 1984| Enterococcus proteiformis| Enterococcus sp. 7L76| Enterococcus sp. KB1| Enterocoque| HAMBI 1711| JCM 5803| JCM 8726| LMG 7937| LMG:7937| Micrococcus ovalis| Micrococcus zymogenes| NBRC 100480| NBRC 100481| NCAIM B.01312| NCDO 581| NCIMB 775| NCTC 775| Streptococcus faecalis| Streptococcus faecalis Andrewes and Horder 1906 (Approved Lists 1980)| Streptococcus glycerinaceus| Streptococcus liquefaciens
Endocarditis, septicemia, urinary tract infections, meningitis
Enterococcus faecium [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| ATCC 19434| CCUG 542| CFBP 4248| CIP 103014| DSM 20477| Enterococcus faecium| Enterococcus faecium (Orla-Jensen 1919) Schleifer and Kilpper-Balz 1984| HAMBI 1710| JCM 5804| JCM 8727| LMG 11423| LMG:11423| NBRC 100485| NBRC 100486| NCDO 942| NCIMB 11508| NCTC 7171| Streptococcus faecium| Streptococcus faecium Orla-Jensen 1919 (Approved Lists 1980)
Pathogen
Enterococcus gallinarum [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| ATCC 49573| CCUG 18658| CECT 970| CIP 103013| DSM 24841| Enterococcus gallinarum| Enterococcus gallinarum (Bridge and Sneath 1982) Collins et al. 1984| JCM 8728| LMG 13129| LMG:13129| NBRC 100675| NCDO 2313| NCIMB 702313| NCTC 12359| strain F87/276| strain PB21| Streptococcus gallinarum| Streptococcus gallinarum Bridge and Sneath 1982
Erysipelotrichaceae [family]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| Erysipelothrix group| Erysipelothrixaceae| Erysipelotrichaceae| Erysipelotrichaceae Verbarg et al. 2004 emend. Tegtmeier et al. 2016
Escherichia coli [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| "Bacillus coli" Migula 1895| "Bacterium coli commune" Escherich 1885| "Bacterium coli" (Migula 1895) Lehmann and Neumann 1896| ATCC 11775| Bacillus coli| bacterium 10a| Bacterium coli| Bacterium coli commune| bacterium E3| CCUG 24| CCUG 29300| CIP 54.8| DSM 30083| E. coli| Enterococcus coli| Escherichia coli| Escherichia coli (Migula 1895) Castellani and Chalmers 1919| Escherichia sp. 3_2_53FAA| Escherichia sp. MAR| Escherichia/Shigella coli| JCM 1649| LMG 2092| LMG:2092| NBRC 102203| NCCB 54008| NCTC 9001
Diarrheal disease in children and travelers, Foodborne diarrhea outbreaks, hemorrhagic colitis, hemolytic-uremic syndrome
Eubacterium callanderi [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| ATCC 49165| DSM 3662| Eubacterium callanderi| Eubacterium callanderi Mountfort et al. 1988| JCM 10284| strain FD
Evtepia gabavorous [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
Faecalibacillus intestinalis [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
Faecalibacterium [genus]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| Faecalibacterium| Faecalibacterium Duncan et al. 2002
Faecalibacterium prausnitzii [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| "Bacillus mucosus anaerobius" Prausnitz 1922| "Bacteroides praussnitzii" (sic) Hauduroy et al. 1937| ATCC 27768| Bacillus mucosus anaerobius| Bacteroides praussnitzii| butyrate-producing bacterium A2-165| Faecalibacterium prausnitzii| Faecalibacterium prausnitzii (Hauduroy et al. 1937) Duncan et al. 2002| Fusobacterium prausnitzii| Fusobacterium prausnitzii (Hauduroy et al. 1937) Moore and Holdeman 1970 (Approved Lists 1980)| NCIMB 13872
Faecalimonas umbilicata [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
Flavonifractor plautii [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| "Bacillus plauti" (sic) Seguin 1928| "Fusocillus plauti" (sic) (Seguin 1928) Prevot 1938| "Zuberella plauti" (sic) (Seguin 1928) Sebald 1962| ATCC 29863| ATCC 49531 [[Clostridium orbiscindens]]| Bacillus plauti| CCUG 28093| Clostridium orbiscindens| Clostridium orbiscindens Winter et al. 1991| DSM 4000| DSM 6740 [[Clostridium orbiscindens]]| DSM 6749 [[Clostridium orbiscindens]]| Eubacterium plautii| Eubacterium plautii (Seguin 1928) Hofstad and Aasjord 1982| Flavonifractor plautii| Flavonifractor plautii (Seguin 1928) Carlier et al. 2010| Fusobacterium plautii| Fusobacterium plautii corrig. Seguin 1928 (Approved Lists 1980)| Fusocillus plauti| Pseudoflavonifractor sp. YL31| strain Prevot S1| Zuberella plauti
Fournierella massiliensis [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| CSUR P2014| DSM 100451| Fournierella massiliensis| Fournierella massiliensis Togo et al. 2017| Ruminococcaceae bacterium AT2| strain AT2
Fusicatenibacter saccharivorans [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| Clostridium sp. HT03-11| Clostridium sp. HT03-14| Clostridium sp. HT03-186| Clostridium sp. HT03-22| Clostridium sp. KO-38| Clostridium sp. TT-111| DSM 26062| Fusicatenibacter saccharivorans| Fusicatenibacter saccharivorans Takada et al. 2013| JCM 18507| strain HT03-11| YIT 12554
Fusobacteriota [phylum]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| Fusobacteraeota| Fusobacteraeota Oren et al. 2015| Fusobacteria| Fusobacteria Garrity and Holt 2001| Fusobacteriota
Fusobacterium [genus]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| Fusibacterium| Fusobacterium| Fusobacterium Knorr 1922
Periodontal disease, Lemierre syndrome, skin ulcers
Gemmiger formicilis [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| ATCC 27749| Gemmiger formicilis| Gemmiger formicilis Gossling and Moore 1975
Gordonibacter pamelaeae [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| CCUG 55131| DSM 19378| Gordonibacter pamelaeae| Gordonibacter pamelaeae Wurdemann et al. 2009 emend. Jin et al. 2014| JCM 16334| strain 7-10-1-b
Gordonibacter urolithinfaciens [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| CCUG 64261| DSM 27213| Gordonibacter sp. CEBAS 1/15P| Gordonibacter urolithinfaciens| Gordonibacter urolithinfaciens Selma et al. 2014| strain CEBAS 1/15P
Haemophilus influenzae [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| "Bacterium influenzae" Lehmann and Neumann 1896| "Coccobacillus pfeifferi" Neveu-Lemaire 1921| "Haemophilus meningitidis" (Martins) Hauduroy et al. 1937| "Influenza-bacillus" Pfeiffer 1892| "Mycobacterium influenzae" (Lehmann and Neumann 1896) Chester 1901| ATCC 33391| Bacterium influenzae| CCUG 23945| CIP 102514| Coccobacillus pfeifferi| DSM 4690| Haemophilus influenzae| Haemophilus influenzae (Lehmann and Neumann 1896) Winslow et al. 1917| Haemophilus meningitidis| Influenza-bacillus| Mycobacterium influenzae| NCTC 8143
Bacteremia, pneumonia, meningitis,Haemophilus influenzae infection
Haemophilus parainfluenzae [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| ATCC 33392| CCUG 12836| CIP 102513| DSM 8978| Haemophilus parainfluenzae| Haemophilus parainfluenzae Rivers 1922| NCTC 7857
Infectious bacteria
Harryflintia acetispora [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
Helicobacter pylori [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| ATCC 43504| ATCC 49396 [[Helicobacter nemestrinae Bronsdon et al. 1991]]| Campylobacter pylori| Campylobacter pylori corrig. Marshall et al. 1985 emend. Fox et al. 1988| Campylobacter pylori corrig. Marshall et al. 1985 emend. Fox et al. 1989| Campylobacter pylori Marshall et al. 1985 corrig. Marshall and Goodwin 1987| Campylobacter pylori subsp. pylori| Campylobacter pylori subsp. pylori Marshall et al. 1985| Campylobacter pyloridis| Campylobacter pyloridis Marshall et al.1985| CCUG 15815 B| CCUG 17874| CCUG 39500| CIP 103995| DSM 21031| DSM 4867| DSM 7492 [[Helicobacter nemestrinae Bronsdon et al. 1991]]| Helicobacter nemestrinae| Helicobacter nemestrinae Bronsdon et al. 1991| Helicobacter pylori| Helicobacter pylori (Marshall et al. 1985) Goodwin et al. 1989| JCM 12093| LMG 18041| LMG 19449| LMG:18041| LMG:19449| NCTC 11637| NCTC 12491 [[Helicobacter nemestrinae Bronsdon et al. 1991]]| strain Royal Perth Hospital 13487| strain T81213-NTB [[Helicobacter nemestrinae Bronsdon et al. 1991]]
Gastric ulcers
Hungatella effluvii [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| Clostridium sp. UB-B.2| DSM 24995| Hungatella effluvii| Hungatella effluvii Kaur et al. 2014| MTCC 11101| strain UB-B.2
Intestinibacter bartlettii [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| ATCC BAA-827| CCUG 48940| Clostridium bartlettii| Clostridium bartlettii Song et al. 2004| DSM 16795| Intestinibacter bartlettii| Intestinibacter bartlettii (Song et al. 2004) Gerritsen et al. 2014| WAL 16138
Intestinimonas butyriciproducens [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| "Candidatus Clostridium anorexicus" Pfleiderer et al. 2013| Candidatus Clostridium anorexicus| CCUG 63529| DSM 26588| Intestinimonas butyriciproducens| Intestinimonas butyriciproducens Klaring et al. 2013| Pseudoflavonifractor sp. 2-1.1| Pseudoflavonifractor sp. SRB-521-5-I| strain SRB-521-5-I
Intestinimonas massiliensis (ex Afouda et al. 2020) [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| "Intestinimonas massiliensis" Durand et al. 2017| CSUR P1930| DSM:100417| Intestinimonas massiliensis| Intestinimonas sp. GD2| strain GD2
Kandleria [genus]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| Kandleria| Kandleria Salvetti et al. 2011
Klebsiella [genus]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| "Donovania" Anderson et al. 1944| "Hyalococcus" Schroeter 1886| Calymmatobacterium| Calymmatobacterium Aragao and Vianna 1913| Donovania| Hyalococcus| Klebsiella| Klebsiella Trevisan 1885 (Approved Lists 1980) emend. Carter et al. 1999| Klebsiella Trevisan 1885 (Approved Lists 1980) emend. Drancourt et al. 2001
Pathogen
Klebsiella oxytoca [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| "Bacillus oxytocus perniciosus" Flugge 1886| ATCC 13182| Bacillus oxytocus perniciosus| CCUG 15717| CIP 103434| DSM 5175| HAMBI 1301| JCM 1665| Klebsiella oxytoca| Klebsiella oxytoca (Flugge 1886) Lautrop 1956| Klebsiella sp. CECRI-24/07| Klebsiella sp. MN9SED2| LMG 3055| LMG:3055| NBRC 102593| NBRC 105695
Klebsiella pneumoniae [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| "Bacillus pneumoniae" (Schroeter 1886) Flugge 1886| "Bacterium pneumoniae crouposae" Zopf 1885| "Hyalococcus pneumoniae" Schroeter 1886| 'Klebsiella aerogenes' (Kruse) Taylor et al. 1956| ATCC 13883| Bacillus pneumoniae| Bacterium pneumoniae crouposae| CCUG 225| CIP 82.91| DSM 30104| HAMBI 450| Hyalococcus pneumoniae| IFO 14940| JCM 1662| Klebsiella pneumoniae| Klebsiella pneumoniae (Schroeter 1886) Trevisan 1887| Klebsiella pneumoniae aerogenes| Klebsiella sp. 2N3| Klebsiella sp. C1(2016)| Klebsiella sp. M-AI-2| Klebsiella sp. PB12| Klebsiella sp. RCE-7| LMG 2095| LMG:2095| NBRC 14940| NCTC 9633
H00301 Klebsiella infection, Pneumonia
Lachnospira eligens [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| [Eubacterium] eligens| ATCC 27750| DSM 3376| Eubacterium eligens| Eubacterium eligens Holdeman and Moore 1974| VPI C15-48
Lactiplantibacillus plantarum [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| "Lactobacillus arabinosus" Fred et al.| "Lactobacillus plantari" (sic) (Orla-Jensen 1919) Bergey et al. 1923 (Approved Lists 1980)| "Lactobacterium plantarum" (Orla-Jensen 1919) Krasil'nikov 1949| "Streptobacterium plantarum" Orla-Jensen 1919| ATCC 14917| ATCC BAA-171 [[Lactobacillus arizonensis]]| B-14768 [[Lactobacillus arizonensis]]| CCUG 30503| CCUG 45396 [[Lactobacillus arizonensis]]| CIP 103151| CIP 106786 [[Lactobacillus arizonensis]]| DSM 13273 [[Lactobacillus arizonensis]]| DSM 20174| IFO 15891| JCM 11125 [[Lactobacillus arizonensis]]| JCM 1149| Lactobacillus arabinosus| Lactobacillus arizonae| Lactobacillus arizonensis| Lactobacillus arizonensis Swezey et al. 2000| Lactobacillus plantari| Lactobacillus plantarum| Lactobacillus plantarum (Orla-Jensen 1919) Bergey et al. 1923| Lactobacillus sp. Lact08| Lactobacillus sp. Lact09| Lactobacillus sp. Lact14| Lactobacillus sp. M6DWS| Lactobacillus sp. S2| Lactobacillus sp. S8| Lactobacillus sp. Z12| Lactobacterium plantarum| LMG 6907| LMG:6907| NBRC 15891| NCIMB 11974| NRRL B-14768 [[Lactobacillus arizonensis]]| NRRL B-4496| Streptobacterium plantarum| Weissella sp. Lact07
Lawsonibacter [genus]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
Lawsonibacter asaccharolyticus [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
Leyella stercorea [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| DSM 18206| JCM 13469| Prevotella sp. CB35| Prevotella stercorea| Prevotella stercorea Hayashi et al. 2007| strain CB35
Massilicoli timonensis [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
Mediterraneibacter faecis [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| JCM 15917| KCTC 5757| Ruminococcus faecis| Ruminococcus faecis Kim et al. 2011| strain Eg2
Methanobrevibacter smithii [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| ATCC 35061| DSM 861| Methanobrevibacter smithii| Methanobrevibacter smithii Balch and Wolfe 1981| OCM 144| strain PS
High Levels linked to long-lived individuals
Monoglobus pectinilyticus [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| Clostridiales bacterium 14| DSM 104782| JCM 31914| Monoglobus pectinilyticus| Monoglobus pectinilyticus Kim et al. 2017| strain 14
Odoribacter laneus [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| DSM 22474| JCM 16069| Odoribacter laneus| Odoribacter laneus Nagai et al. 2010 emend. Hahnke et al. 2016| YIT 12061
Odoribacter splanchnicus [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| ATCC 29572| Bacteroides splanchnicus| Bacteroides splanchnicus Werner et al. 1975| CCUG 21054 A| CIP 104287| DSM 20712| JCM 15291| LMG 8202| LMG:8202| NCTC 10825| Odoribacter splanchnicus| Odoribacter splanchnicus (Werner et al. 1975) Hardham et al. 2008 emend. Hahnke et al. 2016
Oxalobacter formigenes [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| ATCC 35274| CIP 106513| Oxalobacter formigenes| Oxalobacter formigenes Allison et al. 1985| strain OxB
Parabacteroides distasonis [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| "Bacteroides fragilis subsp. distasonis" (Eggerth and Gagnon 1933) Holdeman and Moore 1970| "Pseudobacterium distasonis" (Eggerth and Gagnon 1933) Krasil'nikov 1949| "Ristella distasonis" (Eggerth and Gagnon 1933) Prevot 1938| ATCC 8503| Bacteroides distasonis| Bacteroides distasonis Eggerth and Gagnon 1933 (Approved Lists 1980)| Bacteroides fragilis subsp. distasonis| CCUG 4941| CIP 104284| DSM 20701| JCM 5825| NCTC 11152| Parabacteroides distasonis| Parabacteroides distasonis (Eggerth and Gagnon 1933) Sakamoto and Benno 2006 emend. Hahnke et al. 2016| Pseudobacterium distasonis| Ristella distasonis
Parabacteroides johnsonii [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| DSM 18315| JCM 13406| Parabacteroides johnsonii| Parabacteroides johnsonii Sakamoto et al. 2007 emend. Hahnke et al. 2016| strain M-165
Parabacteroides merdae [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| ATCC 43184| Bacteroides merdae| Bacteroides merdae Johnson et al. 1986| CCUG 38734| CIP 104202| JCM 9497| NCTC 13052| Parabacteroides merdae| Parabacteroides merdae (Johnson et al. 1986) Sakamoto and Benno 2006 emend. Hahnke et al. 2016| VPI T4-1
Infectious bacteria
Parasutterella excrementihominis [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| DSM 21040| JCM 15078| Parasutterella excrementihominis| Parasutterella excrementihominis Nagai et al. 2009| strain YIT 11859
Phascolarctobacterium faecium [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| ACM 3679| DSM 14760| Phascolarctobacterium faecium| Phascolarctobacterium faecium Del Dot et al. 1994
Phocaeicola dorei [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| Bacteroides dorei| Bacteroides dorei Bakir et al. 2006 emend. Hahnke et al. 2016| Bacteroides sp. 175T| Bacteroides sp. 219| DSM 17855| JCM 13471| strain 175
Phocaeicola massiliensis [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| "Candidatus Bacteroides massiliae" Drancourt et al. 2004| Bacteroides massiliensis| Bacteroides massiliensis Fenner et al. 2005 emend. Hahnke et al. 2016| Candidatus Bacteroides massiliae| CCUG 48901| CIP 107942| DSM 17679| JCM 13223| strain B84634
Phocaeicola vulgatus [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| ATCC 8482| bacterium NLAE-zl-G202| Bacteroides vulgatus| Bacteroides vulgatus Eggerth and Gagnon 1933 (Approved Lists 1980) emend. Hahnke et al. 2016| BCRC 12903| CCRC 12903| CCRC:12903| CCUG 4940| CIP 103714| DSM 1447| IFO 14291| JCM 5826| LMG 17767| LMG 7956| LMG:17767| LMG:7956| NBRC 14291| NCTC 11154
Planococcaceae [family]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| Caryophanaceae| Caryophanaceae Peshkoff 1939| Planococcaceae| Planococcaceae Krasil'nikov 1949
Prevotella [genus]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| Prevotella| Prevotella Shah and Collins 1990 emend. Sakamoto and Ohkuma 2012| Prevotella Shah and Collins 1990 emend. Willems and Collins 1995| Xylanibacter| Xylanibacter Ueki et al. 2006
Proteus mirabilis [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| ATCC 29906| CCUG 26767| CIP 103181| DSM 4479| JCM 1669| LMG 3257| LMG:3257| NCTC 11938| Proteus mirabilis| Proteus mirabilis Hauser 1885
Pseudomonadota [phylum]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| Alphaproteobacteraeota| Alphaproteobacteraeota Oren et al. 2015| Alphaproteobacteriota| Proteobacteria| Proteobacteria [class] Stackebrandt et al. 1988| Proteobacteria Garrity et al. 2005| purple bacteria| purple bacteria and relatives| purple non-sulfur bacteria| purple photosynthetic bacteria| purple photosynthetic bacteria and relatives
Pseudomonas aeruginosa [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| "Bacillus aeruginosus" (Schroeter 1872) Trevisan 1885| "Bacillus pyocyaneus" (Zopf 1884) Flugge 1886| "Bacterium aeruginosum" Cohn 1872| "Bacterium aeruginosum" Schroeter 1872| "Bacterium pyocyaneum" (Zopf 1884) Lehmann and Neumann 1896| "Micrococcus pyocyaneus" Zopf 1884| "Pseudomonas pyocyanea" (Zopf 1884) Migula 1895| ATCC 10145| ATCC 10145-U| Bacillus aeruginosus| Bacillus pyocyaneus| Bacterium aeruginosum| bacterium ASFP-37| bacterium ASFP-38| bacterium ASFP-45| bacterium ASFP-46| bacterium ASFP-48| bacterium CRM125| Bacterium pyocyaneum| CCEB 481| CCUG 28447| CCUG 29297| CCUG 551| CFBP 2466| CIP 100720| DSM 50071| IBCS 277| IFO 12689| JCM 5962| LMG 1242| LMG:1242| Micrococcus pyocyaneus| NBRC 12689| NCCB 76039| NCIB 8295| NCIB:8295| NCIMB 8295| NCTC 10332| NRRL B-771| probable synonym or variety: "Pseudomonas polycolor" Clara 1930| Pseudomonas aeruginosa| Pseudomonas aeruginosa (Schroeter 1872) Migula 1900| Pseudomonas polycolor| Pseudomonas pyocyanea| Pseudomonas sp. 2_1_26| Pseudomonas sp. ACP_02| Pseudomonas sp. CRRI 93| Pseudomonas sp. HSA1/2016| Pseudomonas sp. NCIM 2036| Pseudomonas sp. NCIM 2862| Pseudomonas sp. PR_01| Pseudomonas sp. PSE5| Pseudomonas sp. RV3| Pseudomonas sp. UFT2/2016| RH 815| VKM B-588
Opportunistic, nosocomial pneumonia and sepsis
Pyramidobacter piscolens [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| CCUG 55836| DSM 21147| JCM 16336| Pyramidobacter piscolens| Pyramidobacter piscolens Downes et al. 2009| strain W5455| Synergistes sp. P4G_18 P1| Synergistetes bacterium AHN 11662
Roseburia [genus]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| Roseburia| Roseburia Stanton and Savage 1983| Roseburya| Roseburyella
Roseburia intestinalis [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| DSM 14610| NCIMB 13810| Roseburia intestinalis| Roseburia intestinalis Duncan et al. 2002 emend. Duncan et al. 2006| strain L1-82
Roseburia inulinivorans [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| butyrate-producing bacterium A2-194| butyrate-producing bacterium L1-83| DSM 16841| NCIMB 14030| Roseburia inulinivorans| Roseburia inulinivorans Duncan et al. 2006| strain A2-194
Ruminococcus [genus]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| Ruminococcus| Ruminococcus Sijpesteijn 1948
Ruthenibacterium lactatiformans [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| DSM 100348| Ruminococcaceae bacterium 585-1| Ruminococcaceae bacterium 668| Ruthenibacterium lactatiformans| Ruthenibacterium lactatiformans Shkoporov et al. 2016| strain 585-1| VKM B-2901
Salmonella enterica [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| "Bacillus cholerae-suis" Smith 1894| "Salmonella enterica" Kauffmann and Edwards 1952| ATCC 13312 [[Salmonella choleraesuis corrig. (Smith 1894) Weldin 1927 (Approved Lists 1980)]]| ATCC 43971| ATCC 700720| Bacillus cholerae-suis| CCUG 42060| CECT 915 [[Salmonella choleraesuis corrig. (Smith 1894) Weldin 1927 (Approved Lists 1980)]]| CIP 55-133 [[Salmonella choleraesuis corrig. (Smith 1894) Weldin 1927 (Approved Lists 1980)]]| CIP 55.133 [[Salmonella choleraesuis corrig. (Smith 1894) Weldin 1927 (Approved Lists 1980)]]| CIP 58.57 [[Salmonella choleraesuis corrig. (Smith 1894) Weldin 1927 (Approved Lists 1980)]]| CIP 60.62| CIP:55-133 [[Salmonella choleraesuis corrig. (Smith 1894) Weldin 1927 (Approved Lists 1980)]]| DSM 14846 [[Salmonella choleraesuis corrig. (Smith 1894) Weldin 1927 (Approved Lists 1980)]]| DSM 17058| JCM 1651 [[Salmonella choleraesuis corrig. (Smith 1894) Weldin 1927 (Approved Lists 1980)]]| NBRC 105684 [[Salmonella choleraesuis corrig. (Smith 1894) Weldin 1927 (Approved Lists 1980)]]| NBRC 13245| NCIMB 11450| NCTC 12416| NCTC 5735 [[Salmonella choleraesuis corrig. (Smith 1894) Weldin 1927 (Approved Lists 1980)]]| Salmonella cholerae-suis| Salmonella choleraesuis| Salmonella choleraesuis corrig. (Smith 1894) Weldin 1927 (Approved Lists 1980)| Salmonella enterica| Salmonella enterica (ex Kauffmann and Edwards 1952) Le Minor and Popoff 1987| Salmonella enterica ser. choleraesuis| Salmonella sp. AMC 200| Salmonella sp. AMC 238| Salmonella sp. AMC 239| Salmonella sp. AMC 240| Salmonella sp. AMC 253| Salmonella sp. AMC 257| Salmonella sp. AMC 265| Salmonella sp. AMC 266| Salmonella sp. AMC 267| Salmonella sp. AMC 268| Salmonella sp. AMC 270| Salmonella sp. AMC 28| Salmonella sp. AMC 289| Salmonella sp. AMC 291| Salmonella sp. AMC 294| Salmonella sp. AMC 299| Salmonella sp. AMC 301| Salmonella sp. AMC 327| Salmonella sp. AMC 90| Salmonella sp. FDA00013420| Salmonella sp. FDA00013433| Salmonella sp. FDA00013434| Salmonella sp. FDA00013435| Salmonella sp. FDA00013436| Salmonella sp. FDA00013437| Salmonella sp. FDA00013438| Salmonella sp. FDA00013439| Salmonella sp. FDA00013440| Salmonella sp. FDA00013468| Salmonella sp. FDA00013469| Salmonella sp. FDA00013470| Salmonella sp. FDA00013495| Salmonella sp. FDA00013496| Salmonella sp. FDA00013499| Salmonella sp. FDA00013500| Salmonella sp. FDA00013513| Salmonella sp. FDA00013514| Salmonella sp. FDA00013515| Salmonella sp. FDA00013516| Salmonella sp. FDA00013517| Salmonella sp. FDA00013518| Salmonella sp. FDA00013519| Salmonella sp. FDA00013520| Salmonella sp. FDA00013521| Salmonella sp. FDA00013522| Salmonella sp. FDA00013523| Salmonella sp. FDA00013524| Salmonella sp. FDA00013525| Salmonella sp. FDA00013526| Salmonella sp. FDA00013597| Salmonella sp. HC-257| Salmonella sp. IA1-174| Salmonella sp. MH3-A1| Salmonella sp. MH3-A2| Salmonella sp. MH3-A3| Salmonella sp. MH3-C| Salmonella sp. MH3-D1| Salmonella sp. MH3-D2| Salmonella sp. MH3-D3| Salmonella sp. MH3-D4| Salmonella sp. MH3-Z1| Salmonella sp. MH3-Z2| Salmonella sp. MH4-A2| Salmonella sp. MH4-A3| Salmonella sp. MH4-A4| Salmonella sp. MH4-Z2| Salmonella sp. NYVetLIRN-85| Salmonella sp. NYVetLIRN-86| Salmonella sp. NYVetLIRN-87| Salmonella sp. NYVetLIRN-88| Salmonella sp. OH-18-15149| Salmonella sp. OH-18-15334| Salmonella sp. OH-18-15363| Salmonella sp. OH-18-16886| Salmonella sp. OH-18-16934| Salmonella sp. OH-18-18132-1| Salmonella sp. OH-18-18132-10| Salmonella sp. OH-18-18132-11| Salmonella sp. OH-18-18132-12| Salmonella sp. OH-18-18132-13| Salmonella sp. OH-18-18132-14| Salmonella sp. OH-18-18132-15| Salmonella sp. OH-18-18132-2| Salmonella sp. OH-18-18132-3| Salmonella sp. OH-18-18132-4| Salmonella sp. OH-18-18132-5| Salmonella sp. OH-18-18132-6| Salmonella sp. OH-18-18132-7| Salmonella sp. OH-18-18132-8| Salmonella sp. OH-18-18132-9| Salmonella sp. OH-18-18281-1| Salmonella sp. OH-18-18281-2| Salmonella sp. OH-18-18411| Salmonella sp. OH-18-18446| Salmonella sp. OH-18-18447| Salmonella sp. OH-18-18941| Salmonella sp. OH-18-19201| Salmonella sp. OH-18-19951-1| Salmonella sp. OH-18-20073-2T| Salmonella sp. OH-18-20117-1| Salmonella sp. OH-18-20132-7| Salmonella sp. OH-18-20225-1-S| Salmonella sp. OH-18-20225-2-S| Salmonella sp. OH-18-20299-1| Salmonella sp. OH-18-20299-2| Salmonella sp. OH-18-20299-3| Salmonella sp. OH-18-20299-4| Salmonella sp. OH-18-20299-5| Salmonella sp. OH-18-20299-6| Salmonella sp. OH-18-20299-7| Salmonella sp. OH-18-20299-8| Salmonella sp. OH-18-20386| Salmonella sp. OH-18-20895| Salmonella sp. OH-18-20897| Salmonella sp. OH-18-21102| Salmonella sp. OH-18-21112| Salmonella sp. OH-18-21175| Salmonella sp. OH-18-21493-S| Salmonella sp. OH-18-21628| Salmonella sp. OH-18-21629| Salmonella sp. OH-18-21765| Salmonella sp. OH-18-21865-2| Salmonella sp. OH-18-22026| Salmonella sp. OH-18-22045| Salmonella sp. OH-18-22168| Salmonella sp. OH-18-22269-1| Salmonella sp. OH-18-22479| Salmonella sp. SAL-18-VL-LA-TX-0007| Salmonella sp. SAL-18-VL-LA-TX-0008| Salmonella sp. SAL-18-VL-LA-TX-0009| Salmonella sp. SAL-18-VL-NY-MS-0001| Salmonella sp. SAL-18-VL-NY-MS-0002| Salmonella sp. SAL-18-VL-NY-MS-0003| Salmonella sp. SAL-18-VL-NY-NJ-0001| Salmonella sp. SAL-18-VL-NY-UP-NBC-0001| Salmonella sp. SAL-18-VL-NY-UP-NBC-0004| Salmonella sp. SAL-18-VL-NY-UP-NBC-0005| Salmonella sp. SAL-18-VL-NY-UP-NBC-0006| Salmonella sp. SAL-18-VL-NY-UP-NBC-0007| Salmonella sp. SAL-18-VL-OH-IN-0001| Salmonella sp. SAL-18-VL-OH-IN-0002| Salmonella sp. SAL-18-VL-OH-IN-0003| Salmonella sp. SAL-18-VL-OH-IN-0005| Salmonella sp. SAL-18-VL-OH-IN-0007| Salmonella sp. SAL-18-VL-OH-WA-0012| Salmonella sp. SAL-18-VL-OH-WA-0013| Salmonella sp. SAL-18-VL-OH-WA-0014| Salmonella sp. SAL-18-VL-OH-WA-0017| Salmonella sp. TTU_251| Salmonella sp. TTU_258| Salmonella sp. TTU_262| Salmonella sp. TTU_264| Salmonella sp. TTU_265| Salmonella sp. TTU_266| Salmonella sp. TTU_267| Salmonella sp. TTU_269| Salmonella sp. TTU_274| Salmonella sp. TTU_279| Salmonella sp. TTU_282| Salmonella sp. TTU_284| Salmonella sp. TTU_287| Salmonella sp. TTU_289| Salmonella sp. TTU_297| Salmonella sp. TTU_298| Salmonella sp. TTU_299| Salmonella sp. TTU_303| Salmonella sp. TTU_304| Salmonella sp. TTU_305| Salmonella sp. TTU_306| Salmonella sp. TTU_307| Salmonella sp. TTU_308| Salmonella sp. TTU_309| Salmonella sp. TTU_310| Salmonella sp. TTU_311| Salmonella sp. TTU_312| Salmonella sp. TTU_313| Salmonella sp. TTU_314| Salmonella sp. TTU_315| Salmonella sp. TTU_316| Salmonella sp. TTU_317| Salmonella sp. TTU_318| Salmonella sp. TTU_319| Salmonella sp. TTU_320| Salmonella sp. TTU_321| Salmonella sp. TTU_322| Salmonella sp. TTU_323| Salmonella sp. TTU_324| Salmonella sp. TTU_325| Salmonella sp. TTU_326| Salmonella sp. TTU_327| Salmonella sp. TTU_328| Salmonella sp. TTU_329| Salmonella sp. TTU_330| Salmonella sp. TTU_331| Salmonella sp. TTU_332| Salmonella sp. TTU_333| Salmonella sp. TTU_334| Salmonella sp. TTU_335| Salmonella sp. TTU_338| Salmonella sp. TTU_345| Salmonella sp. TTU_352| Salmonella sp. TTU_353| Salmonella sp. TTU_357| Salmonella sp. TTU_358| Salmonella sp. TTU_359| Salmonella sp. TXACF1801691| Salmonella sp. Z-172| Salmonella sp. ZH-248| SGSC 1412| strain LT2
Salmonellosis
Shigella flexneri [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| "Shigella paradysenteriae" Weldin 1927| ATCC 29903| CIP 82.48| DSM 4782| Escherichia/Shigella flexneri| Shigella flexneri| Shigella flexneri Castellani and Chalmers 1919| Shigella paradysenteriae
Dysentery, Shigellosis
Staphylococcus [genus]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| "Aurococcus" Winslow and Rogers 1906| Aurococcus| Staphylococcus| Staphylococcus Rosenbach 1884
Staphylococcus aureus [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| "Micrococcus aureus" (Rosenbach 1884) Zopf 1885| "Micrococcus pyogenes" Lehmann and Neumann 1896| "Staphlococcus pyogenes citreus" Passet 1885| "Staphylococcus pyogenes aureus" Rosenbach 1884| ATCC 12600| ATCC 12600-U| CCM 885| CCUG 1800| CIP 65.8| DSM 20231| HAMBI 66| JCM 20624| Micrococcus aureus| Micrococcus pyogenes| NBRC 100910| NCAIM B.01065| NCCB 72047| NCTC 8532| Staphlococcus pyogenes citreus| Staphylococcus aureus| Staphylococcus aureus Rosenbach 1884| Staphylococcus pyogenes aureus
Skin infections, sinusitis, food poisoning
Staphylococcus saprophyticus [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| "Staphylococcus saprophyticus" Fairbrother 1940| ATCC 15305| BCRC 10786| CCRC 10786| CCRC:10786| CCUG 3706| CIP 76.125| DSM 20229| IAM 12452| JCM 2427| LMG 13350| LMG:13350| NBRC 102446| NCAIM B.01067| NCCB 73011| NCTC 7292| NRRL B-14751| Staphylococcus saprophyticus| Staphylococcus saprophyticus (Fairbrother 1940) Shaw et al. 1951| Staphylococcus sp. HAR3
Urinary tract infections
Streptococcus [genus]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| Streptococcus| Streptococcus Rosenbach 1884
Streptococcus agalactiae [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| "Streptoccocus de la mammite" Nocard and Mollereau 1887| "Streptococcus agalactiae contagiosae" Kitt 1893| "Streptococcus mastitidis" Migula 1900| ATCC 13813| ATCC 51487 [[Streptococcus difficilis corrig. Eldar et al. 1995]]| CCUG 4208| CIP 103227| CIP 103768 [[Streptococcus difficilis corrig. Eldar et al. 1995]]| DSM 2134| JCM 5671| LMG 14694| LMG 15977 [[Streptococcus difficilis corrig. Eldar et al. 1995]]| LMG:14694| LMG:15977 [[Streptococcus difficilis corrig. Eldar et al. 1995]]| NCTC 8181| strain ND 2-22 [[Streptococcus difficilis corrig. Eldar et al. 1995]]| Streptoccocus de la mammite| Streptococcus agalactiae| Streptococcus agalactiae contagiosae| Streptococcus agalactiae Lehmann and Neumann 1896| Streptococcus difficile| Streptococcus difficilis| Streptococcus difficilis corrig. Eldar et al. 1995| Streptococcus mastitidis
Postpartum infection, neonatal sepsis
Streptococcus salivarius [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| ATCC 7073| CCUG 11878| CCUG 17825| CCUG 50207| CIP 102503| DSM 20560| HAMBI 1716| JCM 5707| LMG 11489| LMG:11489| NCFB 1779| NCIMB 701779| NCTC 8618| Streptococcus salivarius| Streptococcus salivarius Andrewes and Horder 1906| Streptococcus salivarius subsp. salivarius| Streptococcus salivarius subsp. salivarius Andrewes and Horder 1906| Streptococcus sp. FStet12| Streptococcus sp. HSISS4
Infectious bacteria
Streptococcus thermophilus [species]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| ATCC 19258| CCUG 21957| CIP 102303| DSM 20617| JCM 17834| LMG 6896| LMG:6896| NCDO 573| NCIMB 8510| Streptococcus salivarius subsp. thermophilus| Streptococcus salivarius subsp. thermophilus (Orla-Jensen 1919) Farrow and Collins 1984| Streptococcus salivarius thermophilus| Streptococcus thermophilus| Streptococcus thermophilus (Orla-Jensen 1919) Schleifer et al. 1995
Veillonella [genus]
↓↓↓ Very Low or none
↓↓ Very Low
↓ Low
✓ Normal
↑ High
↑↑ Very High
↑↑↑ Extremely High
| Veillonella| Veillonella Prevot 1933 (Approved Lists 1980) emend. Aujoulat et al. 2014| Veillonella Prevot 1933 (Approved Lists 1980) emend. Mays et al. 1982